An Approach for Protein Secondary Structure Prediction Using Neural Network
Journal Title: International Journal of Innovative Research in Computer Science and Technology - Year 2015, Vol 3, Issue 6
Abstract
Prediction of tertiary structure of protein and the function of a given protein as efficiently, it is necessary to know the secondary structure of protein, however it is a critical need in biological science. The final destination of this research is to measure the performance of predicting secondary structure of protein by using Neural Network (NN) that inputs are primary sequences of protein. There are two phase in Neural Network, one is training phase that are used to learn the network, to recognize the relation between primary structure and their corresponding secondary structure on a sample set of 75 proteins (16671 residues) of that are known as secondary structure. In testing phase where used on 5 proteins (381 residues) primary sequences that try to predict corresponding secondary structure. In our approach using Neural Network approach, we use one hidden layer with no hidden unit or 25,50,75,100,125 hidden units and we also use different window size (1,2,3,5,7,9…21) to find maximum output. Maximum predicative accuracy of Neural Network is 71.89% at window size 17 and 75 hidden unit of hidden layer for three states helix (H), strand (E) and coil(C). We say that presented approach in this paper is simple with better time complexity in comparison to Jaewon’s work[4].
Authors and Affiliations
Md. Nazrul Islam Mondal, Md. Al Mamun, Md. Zahidur Rahman
Keywords
Related Articles
- EP ID EP748756
- DOI -
- Views 30
- Downloads 0
Comparative Analysis of Energy Cost of Sequential and Parallel Cryptographic Algorithms on Different Platforms
Cell phones, smart cards, and health monitoring gadgets are just a few examples of the numerous battery-powered embedded systems utilized to access, alter, and store sensitive and complicated data today. Users are concer...
A Comprehensive Review of the Significance of Low-code Automation in Risk Management for Banks
This study provides a comprehensive examination of the influence of low-code development platforms in the risk management area within the banking sector. This research delves into the tactical utilization of low-code aut...
Validation and Profile Modification of a Spur Gear to Improve the Gear Tooth Strengths
The idea of using asymmetric tooth forms has gained momentum in gearing design. Similar to symmetric basic rack gears, tooth action parameters are established in the first stage. The second stage involves calculating the...
Image enhancement in wavelet domain using histogram equalization and median filters
Image enhancement is one of the challenging but crucial methods that is employed in image processing technology for enhancing the visual appearance of images. This paper presents an effective and efficient image enhancem...
Grid Interactive Solar Inverters and Their Impact on Power System
The inverter in a grid interactive structure can transform solar generate DC power into AC power that is then fed directly to the grid. As a building receive this AC energy, it is circulated to instruments and lighting a...