Enhanced Matrix Model for Finding Sequence Motif
Journal Title: International Journal on Computer Science and Engineering - Year 2011, Vol 3, Issue 1
Abstract
This paper presents a probabilistic approach to locate motifs in a given set of molecular sequences. Motif is a short sequence of DNA or RNA (or amino acids) which often consists of 5- 16 nucleotides. The methodology presented here is based on probabilistic approach (Likely Hood Ratio) with three wild card ocations to express motif locations and their poor, moderate nd good results on the basis of matches found is observed. The proposed method allows three displacement locations (i.e. 1, , & 11) unlike other motif finding techniques that allow only two displacement locations.
Authors and Affiliations
Pankaj Agarwal , Laxmikant Vishwamitra
Keywords
Related Articles
- EP ID EP160502
- DOI -
- Views 98
- Downloads 0
An Efficient and Robust Metacrawler with Parallel Activities
This paper presents the Metacrawler, a fielded Web service at represents the next level up in the information ``food hain.'' he Metacrawler provides a single, central interface for Web cument searching. Upon receiving a...
A survey on the approaches in honeypot for implementing network security
Honeypot is a supplemented active defence system for network security. It traps attacks, records intrusion information about tools and activities of the hacking process, and prevents attacks outbound the compromised syst...
Generation of a pool of variable size symmetric keys through Image
This paper introduces a new concept of the generation of a unending pool of keys through an image leaving behind the idea of sending keys every time for encryption and decryption. This can help in avoiding the problem of...
Design and Analysis of Fuzzy Metagraph Based Data Structures
Fuzzy metagraph is an emerging technique used in the design of many information processing systems like transaction processing systems, decision support systems, and workflow systems. Very often, even a carefully chosen...
Robust TCP: An improvement on TCP protocol
The Transmission Control Protocol (TCP) is the most popular transport layer protocol for the internet. Congestion Control is used to increase the congestion window size if there is additional bandwidth on the network, an...