Isolation and in silico characterization of full-length cinnamyl alcohol dehydrogenase gene involved in lignin biosynthesis in Neolamarckia cadamba
Journal Title: Journal of Applied Biology & Biotechnology - Year 2018, Vol 6, Issue 2
Abstract
Cinnamyl alcohol dehydrogenase (CAD) catalyzes the reduction of cinnamaldehyde to ρ-coumaryl, coniferyl, and sinapyl alcohols during the last stage of lignin biosynthesis pathway. The CAD gene expression is believed to be important toward the phenotypic characteristics of plants. In the present study, a full-length CAD gene was successfully inferred from EST database (NcdbESTs) of Neolamarckia cadamba through a contig mapping approach. Reverse transcription polymerase chain reaction was conducted to validate the identity of the isolated CAD gene. The full-length CAD gene, designated as NcCAD, is 1,240 bp long with a 1,086 bp open reading frame encoding a protein of 361 amino acids, a 68 bp 5’-UTR, and a 86 bp 3’-UTR. Phylogenetic analysis showed that NcCAD was grouped in the cluster containing both CAD and sinapyl alcohol dehydrogenase (SAD) genes, in which both genes are involved in lignin biosynthesis. This result also demonstrated that the NcCAD gene may pose intermediate characteristics of both CAD and SAD genes. This NcCAD gene can serve as a good candidate gene for further insight into the wood properties of N. cadamba through association genetics study.
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Chitinolytic activity and major antifungal enzyme secretion form Trichoderma spp. was studied. Soil samples were collected from different environmental niche of North Gujarat Region, India and 12 different species of Tri...
Inulinase production in shake-flask fermentations from Mucor circinelloides BGPUP-9
In the present study, an inulinase producing fungal isolate BGPUP-9 was isolated from inulin-rich root tubers of Asparagus racemosus. On the basis of morphological characterization and 18S rRNA gene sequencing, fungal is...
Isolation and in silico characterization of full-length cinnamyl alcohol dehydrogenase gene involved in lignin biosynthesis in Neolamarckia cadamba
Cinnamyl alcohol dehydrogenase (CAD) catalyzes the reduction of cinnamaldehyde to ρ-coumaryl, coniferyl, and sinapyl alcohols during the last stage of lignin biosynthesis pathway. The CAD gene expression is believed to b...
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Growth, haematology and histopathology are important indices in evaluating the health and physiological state of fish. These metabolic and health indices were examined in Clarias gariepinus fed with Zingiber officinale (...
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An efficient plant regeneration protocol through axillary shoot proliferation of nodal explants of a valuable medicinal plant, Paederia foetida, has been developed. Highest shoot multiplication was found on Murashige and...