PRTVBase: A Predicted promoter data base of Retro transcribing virus
Journal Title: Indian Journal of Computer Science and Engineering - Year 2011, Vol 2, Issue 2
Abstract
Database having the information of viral promoters is highly required for molecular basis of virology study. In this work the data base of the predicted promoters of the all retro transcribing genome available in the NCBI has been constructed. The searching option of the gene in the data base includes both name of the virus and NCBI gene accession number and it provides the significant informations of various types promoters present, their strand position in the genome and specific nucleotide sequences etc. The data present in the data would be help the researchers for comparative analyse, to perform cloning study also gene regulation analysis of various deadliest retro transcribing virus. The database is currently managed by MIRC Laboratory of MITS Engineering College, Rayagada and freely accessed through a web interface (http://www.mcb.i.gp/database.html) which provides flexible and reliable searching options of retro transcribing virus promoters.
Authors and Affiliations
RAGHUNATH SATPATHY , ANSHUMAN MAHAPATRA , RASHMIRANJAN BEHERA , RAJESH KUMAR GURU
Keywords
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