Enhance similarity searching algorithm with optimized fast population count method based on parallel design
Journal Title: IOSR Journals (IOSR Journal of Computer Engineering) - Year 2013, Vol 14, Issue 6
Abstract
In chemoinformatics, drug discovery helps the chemists find new drugs with minimum side effects. The new drug should have similar behavior in terms of the chemical molecular formula to a known drug by applying similarity searching algorithms. A lot of previous works speedup the mentioned task by applying a predefined function, popc, which is only available on new GPUs. This research attempt to provide optimized design using different parallel hardware such as Multicore and GPU processors. Here the aim is to minimize hardware memory allocation by proposed data conversion method and improve data transmission speed. We achieved significant results in terms of performance and execution time in both CUDA and OPENMP designs of fast population count method with data conversion when compared to the sequential code
Authors and Affiliations
SeyedVahid Dianat
Keywords
Related Articles
- EP ID EP131194
- DOI -
- Views 145
- Downloads 0
Photo Catalytic Degradation of Effluent of Iron and Power Plant Industries in Aqueous Solution by CDS Nano Catalyst Using UVIrradiation
Abstract: The iron and power plant industries consume significant amount of water during the power generation and finishing operations. In this operation a used water having high chemical oxygen demand contents and the w...
Finger Vein Based Licensing And Authentication Scheme Using GSM
Finger vein authentication scheme is a non imitable biometric authentication scheme. By using this biometric authentication, we can prevent the non license from driving. So we will avoid accidents. The proposed &...
Node Replication Attack Detection Algorithms in Wireless Sensor Networks: A Survey.
Abstract: The sensor networks are often deployed in hostile environments and are not attended for long time. Deployment of these networks is increased in the recent years, as they help in monitoring and analyzing d...
Adaptive Personalized Web Search with Safety Seclusion
Abstract: The Comprehensive research demonstrations the competence of our framework. We additionally give an online expectation component to choosing whether customizing a query is beneficial. Personalized web search (PW...
Enhancement in Decision Making with Improved Performance by Multiagent Learning Algorithms
Abstract:The output of the system is a sequence of actions in some applications. There is no such measure as the best action in any in-between state; an action is excellent if it is part of a good policy. A single action...