slugAnalysing Multiple DNA Sequence Alignment Algorithms- Smith Waterman Algorithm and Parallel Smith Waterman Algorithm
Journal Title: International Journal for Research in Applied Science and Engineering Technology (IJRASET) - Year 2014, Vol 2, Issue 4
Abstract
Multiple DNA sequence alignment is one of the important research topics of bioinformatics. Rapid and automated sequence analysis facilitates everything from functional classification & structural determination of proteins, to studies of genetic expression and evolution. Rapid and automated sequence analysis facilitates everything from functional classification & structural determination of proteins, to studies of genetic expression and evolution. The ultimate choice of sequence search algorithms is Smith Waterman. However, because of computationally demanding nature of this method, special purpose hardware alternatives of this method like Parallel Smith Waterman have been developed. This keeps the essence of smith waterman with faster computations. In this paper, we present the efficiency of Parallel Smith Waterman over Smith Waterman algorithm.
Authors and Affiliations
Kartika Ahuja, Kompal
Keywords
Related Articles
- EP ID EP17979
- DOI -
- Views 361
- Downloads 10
An Optimized Modified Booth Recoder for Efficient Design of the Add-Multiply Operator
Modern consumer electronics make extensive use of Digital Signal Processing (DSP) providing custom accelerators for the domains of multimedia, communications etc. Typical DSP applications carry out a large number of ari...
Evaluating Code Clone Techniques
In the last decade, several researchers have investigated techniques to detect duplicated code in programs exceeding hundreds of thousands lines of code. All of these techniques have known merits and deficiencies, but a...
Comparative Study of Various Types of Dampers used for Multi-Story R.C.C. Building
dampers are used to resist lateral forces coming on the structure. Dampers are the energy dissipating devices which also resist displacement of rc building during earthquake. These dampers help the structure to reduce t...
Performance Investigation of Hybrid Power System with Wind Energy Conversion System
This paper presents the automatic reactive power control of isolated wind–diesel hybrid power systems having a permanent-magnet induction generator for a wind energy conver- sion system and a synchronous generator for a...
slugComparative Study of Various Neural Network Models for Software Quality Estimation
Quality measurement is a challenging job now a day to measure accurate quality. There are number of models available to measure the software quality. This paper presents the application of neural network in software qua...