slugAnalysing Multiple DNA Sequence Alignment Algorithms- Smith Waterman Algorithm and Parallel Smith Waterman Algorithm
Journal Title: International Journal for Research in Applied Science and Engineering Technology (IJRASET) - Year 2014, Vol 2, Issue 4
Abstract
Multiple DNA sequence alignment is one of the important research topics of bioinformatics. Rapid and automated sequence analysis facilitates everything from functional classification & structural determination of proteins, to studies of genetic expression and evolution. Rapid and automated sequence analysis facilitates everything from functional classification & structural determination of proteins, to studies of genetic expression and evolution. The ultimate choice of sequence search algorithms is Smith Waterman. However, because of computationally demanding nature of this method, special purpose hardware alternatives of this method like Parallel Smith Waterman have been developed. This keeps the essence of smith waterman with faster computations. In this paper, we present the efficiency of Parallel Smith Waterman over Smith Waterman algorithm.
Authors and Affiliations
Kartika Ahuja, Kompal
Keywords
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