On Using DNA Distances And Consensus In Repeats Detection

Abstract

Sequence repeats are the simplest form of regularity and analyzing repeats can lead to first clues to evidencing new biological phenomena. Many of the methods for detecting repeated sequences are part of the digital signal processing (DSP) field and, therefore, the numerical representation of genomic signals is very important. Most of these methods use distances and consensus sequences to generate candidate sequences. This paper presents results obtained using a dedicated numerical representation and a mapping algorithm with different distances and consensus types to isolate the position of DNA repeats with specific lengths.

Authors and Affiliations

Petre POP

Keywords

Related Articles

Implementation Issues For a Video Streaming Server In IEEE 802.11E Wlans

Recent years have seen a proliferation of real-time multimedia traffic over a more and more heterogeneous Internet. Video streaming at high, consistent quality over wireless links proves to be a difficult task. Several...

Analysing the Stability of Circuits Based on Operational Amplifiers by Using Frequency-Domain Simulations

This paper analyzes in detail two of the most popular methods of determining the loop gain of OpAmp-based feedback circuits through frequency-domain Spice simulations. The limitations of the simpler method – that involve...

Accelerated Ageing Tests of Aluminum Electrolytic Capacitors for Evaluating Lifetime Prediction Models

During the course of the presented work accelerated ageing tests at constant temperature for aluminum electrolytic capacitors were carried out. The obtained results from practical tests are compared with projections of t...

Study on the Effects of Precipitation On Earth-to-Satellite Links in The Ka Band

The use of higher frequency bands, above 10 GHz, for satellite communication provides a number of important benefits. It relieves congestion in the lower frequencies which are sheared with terrestrial links, in the same...

An Adaptive Digital Compensation Design for Buck Converter Topology

: This paper presents a digital type III compensator that needs no calculation made by a designer. First an analog type III compensator is designed for a buck converter and based on it the digital model is obtained. Both...

Download PDF file
  • EP ID EP114636
  • DOI -
  • Views 113
  • Downloads 0

How To Cite

Petre POP (2012). On Using DNA Distances And Consensus In Repeats Detection. Acta Technica Napocensis- Electronica-Telecomunicatii (Electronics and Telecommunications), 53(4), 27-32. https://europub.co.uk/articles/-A-114636